Thanks, Nate! I get where you're coming from and understand the change.
While I was messing around with it things were falling into place, but I have one more related question.
On a test animation I'm working on I flipped the root with the "x Flip" box just to see what would happen and it worked fine, but when I set the root to have a value of -1.0, it didn't produce the same results.
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I opened the tree and several slots still had two positive scale values, what am I over looking?
You and Pharan have been very helpful, I'm sorry to have to ask so many questions!